| Authors | _ |
| Journal | Journal of Molecular Graphics and Modelling |
| Page number | 108809-108817 |
| Serial number | 131 |
| Volume number | 1 |
| IF | 1.754 |
| Paper Type | Full Paper |
| Published At | 2024 |
| Journal Type | Typographic |
| Journal Country | Iran, Islamic Republic Of |
| Journal Index | JCR،Scopus |
Abstract
In the present work, molecular dynamics simulation is applied to evaluate the drug carrier efficiency of graphene
oxide nanoflake (GONF) for loading of Selinexor (SXR) drug as well as the drug delivery by 2D material through
the membrane in aqueous solution. In addition, to investigate the adsorption and penetration of drug-nanocarrier
complex into the cell membrane, well-tempered metadynamics simulations and steered molecular dynamics
(SMD) simulations were performed. Based on the obtained results, it is evident that intermolecular hydrogen
bonds (HBs) and π-π interactions play a significant role in expediting the interaction between drug molecules and
the graphene oxide (GO) nanosheet, ultimately resulting in the formation of a stable SXR-GO complex. The
Lennard-Jones (L-J) energy value for the interaction of SXR with GONF is calculated to be approximately − 98.85
kJ/mol. In the SXR-GONF complex system, the dominant interaction between SXR and GONF is attributed to the
L-J term, resulting from the formation of a strong π− π interaction between the drug molecules and the substrate
surface. Moreover, our simulations show by decreasing the distance of GONF with respect to cell membrane, the
interaction energy of GONF-membrane significantly decrease to − 1500 kJ/mol resulting in fast diffusion of SXRGONF complex toward the bilayer surface that is favored opening the way to natural drug nanocapsule
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